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Much of this article applies to lotic ecosystems in general, including related lotic systems such as streams and springs. Lotic waters range from springs only a few centimeters wide to major rivers kilometers in width. Lotic refers to flowing water, from the Latin lotus, meaning washed. River ecosystems are prime examples of lotic ecosystems. The most important negative effects are the reduction of spring flooding, which damages wetlands, and the retention of sediment, which leads to the loss of deltaic wetlands. A dam produces negative effects that continue down the watershed. Environmental threats to rivers include loss of water, dams, chemical pollution and introduced species.

Anadromous fish are also an important source of nutrients. The food base of streams within riparian forests is mostly derived from the trees, but wider streams and those that lack a canopy derive the majority of their food base from algae. These distinctions form the basis for the division of rivers into upland and lowland rivers. Faster moving turbulent water typically contains greater concentrations of dissolved oxygen, which supports greater biodiversity than the slow-moving water of pools. The major zones in river ecosystems are determined by the river bed's gradient or by the velocity of the current. River ecosystems are part of larger watershed networks or catchments, where smaller headwater streams drain into mid-size streams, which progressively drain into larger river networks. River ecosystems are flowing waters that drain the landscape, and include the biotic (living) interactions amongst plants, animals and micro-organisms, as well as abiotic (nonliving) physical and chemical interactions of its many parts. This stream operating together with its environment can be thought of as forming a river ecosystem.

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